$ echo -e "intergenic\nintrons\nexons\n5utr\n3utr" | parallel 'echo {} $ANNOTATION/{}.bed'
3utr /3utr.bed
5utr /5utr.bed
intergenic /intergenic.bed
introns /introns.bed
exons /exons.bed
$ANNOTATION is not correctly read. One workout I found is to export the variable before the parallel, e.g.
export ANNOTATION=/reference/annotation
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