bsub -v option can set the limit:
-v swap_limit
Set the total process virtual memory limit to
swap_limit for the whole job. The default is
no limit. Exceeding the limit causes the job to
terminate.
By default, the limit is specified in KB. Use
LSF_UNIT_FOR_LIMITS in lsf.conf to specify a
larger unit for the limit (MB, GB, TB, PB, or EB).
Without administrator permission, one cannot change the lsf.conf.
So as a user what you can do is to switch to use a different queue with larger swap limit. Here is the command to check the limit for a queue, e.g.
$bqueues -l normal | grep -A 1 SWAP
CORELIMIT MEMLIMIT SWAPLIMIT
0 M 8 G 12 G
Here is what I got from our cluster:
CORELIMIT MEMLIMIT SWAPLIMIT
0 M 8 G 12 G
Here is what I got from our cluster:
$ for i in `bqueues | grep -v QUEUE_NAME | cut -f1 -d' '`; do echo $i; bqueues -l $i | grep -A 1 SWAP; done
interact
MEMLIMIT SWAPLIMIT
39 G 47 G
interact-big
MEMLIMIT SWAPLIMIT
488 G 586 G
gpu
CORELIMIT MEMLIMIT SWAPLIMIT
0 M 23 G 29 G
elephant
CORELIMIT MEMLIMIT SWAPLIMIT
0 M 2 T 2 T
big-multi
CORELIMIT MEMLIMIT SWAPLIMIT
0 M 498 G 500 G
big
CORELIMIT MEMLIMIT SWAPLIMIT
0 M 498 G 500 G
normal
CORELIMIT MEMLIMIT SWAPLIMIT
0 M 8 G 12 G
medium
CORELIMIT MEMLIMIT SWAPLIMIT
0 M 9 G 12 G
vshort
CORELIMIT MEMLIMIT SWAPLIMIT
0 M 8 G 10 G
short
CORELIMIT MEMLIMIT SWAPLIMIT
0 M 8 G 10 G
long
CORELIMIT MEMLIMIT SWAPLIMIT
0 M 9 G 12 G
vlong
CORELIMIT MEMLIMIT SWAPLIMIT
0 M 8 G 12 G
mpi-short
CORELIMIT MEMLIMIT SWAPLIMIT
0 M 8 G 10 G
mpi-ib
CORELIMIT MEMLIMIT SWAPLIMIT
0 M 248 G 254 G
aaa-chunk
CORELIMIT MEMLIMIT SWAPLIMIT
0 M 117 G 125 G
pcpgmwgs
matlab
CORELIMIT MEMLIMIT SWAPLIMIT
0 M 250 G 250 G
matlabdce
CORELIMIT MEMLIMIT SWAPLIMIT
0 M 250 G 250 G
matlabdce-short
CORELIMIT MEMLIMIT SWAPLIMIT
0 M 4 G 250 G
defaultlow
CORELIMIT MEMLIMIT SWAPLIMIT
0 M 8 G 12 G
pcpgm
filemove
CORELIMIT MEMLIMIT SWAPLIMIT
0 M 12 G 12 G
rerunnable
rerunnable-big
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