Can't open ~/scratch/bw/wgEncodeOpenChromChipMcf7Pol2Aln_2Reps.norm5.rawsignal.bw to read
No such file or directory
But obviously the file is there with permission of 755 (-rwxr-xr-x).
Finally by taking Brian's suggestion, I used absolute path, instead of relative path with tilde (e.g. ~ ), the error disappeared.
Don't know if this is required by the code itself or just an usual difference between ~ and /home.
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