1. The custom track data may be compressed by any of the following programs: gzip (.gz), compress (.Z), or bzip2 (.bz2). But not for bigwig and bam.
2. In a track hub Db configuration file, up to 9 subgroup types can be defined for a composite, such as:
subGroup1 <gTag1> <gTitle1> <mTag1a=mTitle1a> [mTag1b=mTitle1b…]
subGroup2 <gTag2> <gTitle2> <mTag2a=mTitle2a> [mTag2b= mTitle2b…]
...
subGroup9 <gTag9> <gTitle9> <mTag9a=mTitle9a> [mTag9b= mTitle9b…]
subGroup2 <gTag2> <gTitle2> <mTag2a=mTitle2a> [mTag2b= mTitle2b…]
...
subGroup9 <gTag9> <gTitle9> <mTag9a=mTitle9a> [mTag9b= mTitle9b…]
But these is no such limitation (I guess so, not test yet) for the tag/title pairs in each subGroup. For example, ENCODE data trackDb put all TFs in one subGroup:
http://ftp.ebi.ac.uk/pub/databases/ensembl/encode/integration_data_jan2011/hg19/trackDb.txt
One question: How to share tracks but secure the data files in the track hub?
The current directory hierarchy for a hub is like:
myHub/ - directory containing track hub files hub.txt - a short description of hub properties genomes.txt - list of genome assemblies included in the hub data hg19/ - directory of data for the hg19 (GRCh37) human assembly trackDb.txt - display properties for tracks in this directory dnase.html - description text for a DNase track dnaseLiver.bigWig - wiggle plot of DNase in liver dnaseLiver.bigBed - regions of active DNase dnaseLung.bigWig - wiggle plot of DNase in lung dnaseLung.bigWig - regions of active DNase ... rnaSeq.html - description text for an RNAseq track rnaSeqLiver.bigWig - wiggle plot of RNAseq data in liver rnaSeqLiver.bigBed - intron/exon lists for liver rnaSeqLung.bigWig - wiggle plot of RNAseq data in lung rnaSeqLung.bigBed - intron/exon lists for lung hg18/ - directory of data for the hg18 (Build 36) human assembly trackDb.txt - display properties for tracks in this directory dnase.html - description text for a DNase track dnaseLiver.bigWig - wiggle plot of DNase data in liver dnaseLiver.bigBed - regions of active DNase dnaseLung.bigWig - wiggle plot of DNase data in lung dnaseLung.bigWig - regions of active DNase ... rnaSeq.html - description text for an RNAseq track rnaSeqLiver.bigWig - wiggle plot of RNAseq data in liver rnaSeqLiver.bigBed - intron/exon lists for liver rnaSeqLung.bigWig - wiggle plot of RNAseq data in lung rnaSeqLung.bigBed - intron/exon lists for lung
The UCSC webpage also indicates that "unlisted hubs are in no way secure." But this is definitely a unsolved problem. Maybe the only solution is to set up your own local mirror?
The genome browser at the University of California Santa Cruz (UCSC) is a popular web based tools for rapidly displaying the requested portion of a genome at any scale.
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